Docker

A Docker image with all the dependencies of MetaPhage is available from Docker hub, and can be pre-downloaded via:

docker pull andreatelatin/metaphage:1.0

Running with Docker (manually)

Add -with-docker andreatelatin/metaphage:1.0 to the pipeline to manually specify that the dependencies will be found in the MetaPhage docker image.

Running with Docker (configuration)

A simpler way to specify the container is with a configuration file, for example:

docker.enabled     = true
process.container  = 'andreatelatin/metaphage:1.0'

Nextflow documentation

• Nextflow: Docker containers